Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01762

Metabolite ID
P01762
Deionized mass
200.0769 Da
Average m/z
201.0849
Average RT
4.3155
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
79
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

79 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)4.575e-17
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.21e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)8.628e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)9.769e-15
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.327e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.837e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.837e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.738e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)7.697e-11
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)7.77e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.79e-13
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.244e-12
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)3.013e-15
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 2Chr19:860974–865476 (+)4.178e-14
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)8.494e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.643e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.718e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.047e-15
Glyma.03G035800 hypothetical protein NA 1Chr03:4317466–4321009 (+)3.664e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)8.129e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.541e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.769e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.226e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.226e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.226e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.236e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.636e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.067e-13
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.81e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.81e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.81e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.812e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.21e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.21e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.811e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)8.534e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.642e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.43e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)4.455e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)8.431e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.036e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.869e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.269e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.269e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.045e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.045e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.628e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)8.673e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.049e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.048e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.837e-13
Glyma.14G044100 hypothetical protein AT5G62300:AT5G62300:Ribosomal protein S10p/S20e family protein 1Chr14:3347545–3348907 (+)1.254e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.421e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.576e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.595e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.229e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.183e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.229e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.229e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.979e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.836e-17
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)4.222e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.404e-13
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)9.553e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)9.618e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.157e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)4.15e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)9.769e-15
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)8.828e-14
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)6.189e-14
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)9.566e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.538e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.538e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)3.013e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)9.349e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)1.493e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.29e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.29e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)8.673e-11