Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01724

Metabolite ID
P01724
Deionized mass
342.1143 Da
Average m/z
343.1204
Average RT
4.2690
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
91
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

91 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)4.448e-17
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)1.067e-11
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)2.45e-15
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.185e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)9.131e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.767e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.84e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)9.006e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.497e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.821e-11
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)4.291e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.37e-19
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)3.013e-13
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)2.427e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)2.427e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)3.955e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.767e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.935e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)8.087e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.961e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.172e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.09e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.594e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.915e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.977e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.977e-11
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 1Chr06:14104416–14111842 (+)3.763e-13
Glyma.06G285000 hypothetical protein AT2G42390:AT2G42390:kinase C substrate, heavy chain-like protein 1Chr06:47349868–47363027 (-)3.894e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.423e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.423e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.391e-13
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)3.789e-11
Glyma.08G114000 hypothetical protein AT5G46430:AT5G46430:Ribosomal protein L32e 1Chr08:8737686–8739958 (+)8.275e-11
Glyma.08G114200 hypothetical protein AT4G08810:SUB1:calcium ion binding protein 1Chr08:8743328–8745667 (-)6.698e-11
Glyma.08G114400 hypothetical protein AT4G25650:ACD1-LIKE:ACD1-like protein 1Chr08:8750828–8756629 (-)6.698e-11
Glyma.08G114500 hypothetical protein AT4G38500:AT4G38500:Sept9 (DUF616) 1Chr08:8757033–8762145 (+)6.698e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.767e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.767e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.767e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.767e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)5.8e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.056e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)7.339e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)7.339e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.083e-15
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)2.45e-15
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)2.45e-15
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)9.71e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)9.71e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.275e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.275e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.275e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.275e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.312e-12
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)2.235e-12
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)2.235e-12
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)2.235e-12
Glyma.12G002400 hypothetical protein AT5G47850:CCR4:CRINKLY4 related 4 1Chr12:197288–200229 (+)2.117e-11
Glyma.12G003500 hypothetical protein AT5G61670:AT5G61670:orange protein 1Chr12:285588–289372 (-)2.436e-11
Glyma.12G003900 hypothetical protein AT5G51550:EXL3:EXORDIUM like 3 1Chr12:302437–304546 (+)3.377e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)3.641e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.978e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.418e-11
Glyma.14G083200 hypothetical protein NA 1Chr14:7249145–7256947 (-)8.172e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)5.332e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)5.332e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.84e-11
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)2.985e-13
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)4.448e-12
Glyma.16G207600 hypothetical protein AT5G23550:AT5G23550:Got1/Sft2-like vescicle transport protein family 1Chr16:36733685–36738992 (+)3.566e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)5.85e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.276e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.185e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.147e-15
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.147e-15
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)5.212e-13
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)5.212e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.184e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.184e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)5.449e-11
Glyma.19G097300 hypothetical protein AT3G26890:AT3G26890:meiosis chromosome segregation family protein 1Chr19:34177996–34184886 (-)1.377e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)2.211e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)1.067e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)5.433e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.16e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.398e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.512e-13
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.987e-13
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.078e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.281e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.94e-12