Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01623

Metabolite ID
P01623
Deionized mass
181.0588 Da
Average m/z
182.0669
Average RT
4.1653
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 4Chr03:2202325–2234931 (+)5.346e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.318e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)9.731e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.254e-12
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)2.318e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)1.9e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)3.138e-17
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.772e-13
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)2.668e-11
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)7.232e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)5.362e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.288e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)7.788e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)5.957e-11
Glyma.05G131500 hypothetical protein AT5G44800:CHR4:chromatin remodeling 4 1Chr05:32446303–32473428 (+)5.03e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.941e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.941e-13
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)6.733e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.372e-15
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.58e-13
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.033e-11
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)1.826e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.936e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.318e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)8.085e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)8.085e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.949e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.949e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)3.623e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.248e-14
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)5.334e-14
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)4.066e-12
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)3.369e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.826e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.951e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)4.915e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.61e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.61e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.609e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)3.308e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.359e-12
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)1.519e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.11e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.071e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)2.353e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)3.914e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.283e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.485e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.174e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.328e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.908e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)8.635e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.189e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.189e-11