Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01489

Metabolite ID
P01489
Deionized mass
162.0506 Da
Average m/z
163.0579
Average RT
4.0222
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)3.321e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.006e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.834e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.392e-15
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.108e-14
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.727e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)4.788e-15
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)5.953e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.953e-15
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)3.068e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)3.405e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.006e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.434e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.875e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.879e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.879e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.879e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)2.134e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.452e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)8.235e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.491e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.372e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.52e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.057e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.057e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.057e-11
Glyma.06G144500 hypothetical protein NA 1Chr06:11760207–11764333 (-)5.093e-13
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)1.042e-11
Glyma.06G147600 BRI1A brassinosteroid receptor AT4G39400:BRI1:Leucine-rich receptor-like protein kinase family protein 1Chr06:12052122–12056526 (-)4.526e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)3.851e-15
Glyma.06G190400 hypothetical protein NA 1Chr06:16712132–16714812 (-)1.218e-11
Glyma.06G190600 hypothetical protein NA 1Chr06:16718710–16723775 (-)2.06e-12
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)7.289e-13
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.788e-15
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)4.283e-12
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)8.707e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.79e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.953e-15
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.953e-15
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.423e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.953e-15
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)7.285e-15
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)2.017e-14
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)1.872e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)1.872e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.622e-14
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.856e-15
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.238e-11
Glyma.11G223400 hypothetical protein NA 1Chr11:31842750–31844002 (-)3.305e-11
Glyma.11G224600 hypothetical protein NA 1Chr11:31955324–31960347 (+)5.801e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.64e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.64e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)9.31e-11
Glyma.13G186500 hypothetical protein AT5G13750:ZIFL1:zinc induced facilitator-like 1 1Chr13:30016526–30025554 (+)3.839e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.234e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.837e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.401e-12
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)1.973e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.754e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.754e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.754e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.317e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.166e-15
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.768e-12
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)4.071e-11
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)5.086e-11
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)5.608e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.834e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.392e-15
Glyma.16G210500 hypothetical protein NA 1Chr16:36959125–36962955 (+)6.695e-11
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)6.203e-11
Glyma.17G147100 hypothetical protein AT3G04920:AT3G04920:Ribosomal protein S24e family protein 1Chr17:12129715–12133104 (+)2.944e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.222e-13
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.108e-14
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)8.635e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)1.465e-12
Glyma.20G002800 hypothetical protein NA 1Chr20:259703–260884 (+)1.633e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)5.356e-13