Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01368

Metabolite ID
P01368
Deionized mass
262.1167 Da
Average m/z
263.1229
Average RT
3.9339
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
96
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

96 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 6Chr19:3335896–3343744 (+)3.409e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)5.324e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)8.385e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)4.173e-15
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)4.88e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)7.111e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.625e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.625e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)7.609e-15
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)1.056e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)5.783e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.409e-16
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.904e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.037e-12
Glyma.19G057000 hypothetical protein NA 2Chr19:10403335–10404974 (-)2.101e-13
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)3.888e-11
Glyma.01G022800 hypothetical protein AT5G65490:AT5G65490:suppressor-like protein 1Chr01:2296901–2303966 (+)4.055e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.736e-14
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.188e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.939e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.355e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.663e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.098e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.734e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.427e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.427e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.427e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.249e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.219e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.219e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.219e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.342e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.342e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.004e-14
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.321e-12
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)3.38e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)1.69e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)8.033e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.896e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)5.831e-12
Glyma.09G148600 hypothetical protein AT5G51890:AT5G51890:Peroxidase superfamily protein 1Chr09:36761818–36764607 (+)2.307e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)8.343e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.296e-17
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.13e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.13e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.13e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.13e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.672e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.793e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)2.033e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)7.017e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.324e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.91e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.573e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.573e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.625e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)2.761e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.604e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.604e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.604e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.111e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.252e-14
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)5.327e-20
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.734e-16
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.353e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)1.007e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.193e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.694e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.114e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.371e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.228e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.371e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.371e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.891e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.19e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.584e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.601e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)4.485e-13
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.803e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.783e-12
Glyma.19G026900 hypothetical protein NA 1Chr19:3331196–3333961 (-)1.116e-11
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)1.988e-13
Glyma.19G031200 hypothetical protein NA 1Chr19:3870532–3874170 (-)1.082e-11
Glyma.19G032500 hypothetical protein NA 1Chr19:4140729–4141955 (-)2.933e-11
Glyma.19G052900 hypothetical protein NA 1Chr19:8583097–8583963 (+)2.101e-13
Glyma.19G053000 hypothetical protein NA 1Chr19:8595506–8596004 (+)2.101e-13
Glyma.19G053200 hypothetical protein AT5G45910:AT5G45910:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr19:8614188–8615729 (-)2.101e-13
Glyma.19G060200 hypothetical protein AT3G27570:AT3G27570:Sucrase/ferredoxin-like family protein__AT5G40510:AT5G40510:Sucrase/ferredoxin-like family protein 1Chr19:11917708–11922501 (-)1.806e-11
Glyma.19G060900 hypothetical protein NA 1Chr19:12184420–12191004 (+)2.101e-13
Glyma.19G062200 hypothetical protein NA 1Chr19:13057166–13057974 (-)2.101e-13
Glyma.19G066600 hypothetical protein NA 1Chr19:18168108–18174666 (+)2.101e-13
Glyma.19G066800 hypothetical protein AT5G53430:SDG29:SET domain group 29 1Chr19:18371538–18401257 (+)2.101e-13
Glyma.19G068500 hypothetical protein NA 1Chr19:20969006–20969859 (-)1.806e-11
Glyma.19G070700 hypothetical protein AT1G70790:AT1G70790:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr19:23598719–23603130 (+)2.101e-13
Glyma.19G073200 hypothetical protein AT1G25390:AT1G25390:Protein kinase superfamily protein 1Chr19:26248452–26264052 (+)2.101e-13
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)1.443e-12