Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01069

Metabolite ID
P01069
Deionized mass
180.0057 Da
Average m/z
181.0127
Average RT
3.7578
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 2Chr01:1009200–1013846 (+)1.041e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.307e-13
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)3.093e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)7.681e-11
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)6.699e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)1.879e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)1.489e-12
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)1.489e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)5.496e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.385e-15
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.696e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)7.707e-15
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)8.511e-14
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)4.836e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)4.836e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)4.836e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)4.836e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)4.836e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)4.836e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)4.836e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.381e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.18e-11
Glyma.05G217100 hypothetical protein AT1G64440:RHD1:NAD(P)-binding Rossmann-fold superfamily protein 1Chr05:39735139–39739763 (+)4.103e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.88e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.071e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)6.656e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.916e-16
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.917e-21
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.493e-19
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)6.03e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.195e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)4.576e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)1.545e-11
Glyma.11G184400 hypothetical protein NA 1Chr11:25256684–25259757 (+)1.521e-11
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)2.535e-11
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)2.535e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.176e-12
Glyma.13G053000 hypothetical protein AT3G02230:RGP1:reversibly glycosylated polypeptide 1 1Chr13:15046821–15050021 (+)5.326e-12
Glyma.14G011900 hypothetical protein AT5G55960:AT5G55960:transmembrane protein C9orf5 protein 1Chr14:902341–905336 (-)3.213e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.598e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.123e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.699e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.122e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.699e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.699e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.491e-14
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)5.333e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)4.472e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.316e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.429e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.975e-13
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)6.165e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)5.504e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)5.504e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)5.504e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)5.388e-11