Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01041

Metabolite ID
P01041
Deionized mass
482.0337 Da
Average m/z
483.0418
Average RT
3.7461
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
100
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

100 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)1.157e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)6.514e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)5.341e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)3.633e-16
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)2.13e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.13e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.822e-13
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)3.916e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.01e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.101e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.645e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.838e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.905e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.26e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.159e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.654e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.654e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.654e-11
Glyma.05G131100 hypothetical protein AT5G60620:GPAT9:glycerol-3-phosphate acyltransferase 9 1Chr05:32411641–32419257 (+)7.985e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)7.985e-14
Glyma.05G131500 hypothetical protein AT5G44800:CHR4:chromatin remodeling 4 1Chr05:32446303–32473428 (+)8.954e-14
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.312e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)7.692e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.194e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.011e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.504e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.12e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.12e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)5.541e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.745e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.745e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.745e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.618e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.618e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.261e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.285e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.261e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.261e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.285e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.48e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.13e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.13e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.13e-12
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)5.866e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)2.737e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.486e-13
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)2.254e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.454e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.246e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.667e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.01e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.922e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.395e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.986e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.646e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.971e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.047e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.301e-12
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)2.832e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)3.316e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.537e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.537e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.754e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.381e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.228e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.228e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.456e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)7.301e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.301e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)5.549e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)6.451e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)6.451e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.734e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.174e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.174e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.653e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.422e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.036e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.646e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.036e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.036e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.763e-14
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)7.954e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.633e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)6.896e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)5.636e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.584e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.554e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.927e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)9.989e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)9.989e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.799e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)6.514e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)7.856e-11
Glyma.18G111000 F6'H1 feruloyl CoA ortho-hydroxylase 1 NA 1Chr18:13141007–13143331 (-)3.367e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)7.139e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.224e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.914e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)6.846e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.952e-11