Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P01000

Metabolite ID
P01000
Deionized mass
251.0413 Da
Average m/z
252.0493
Average RT
3.7245
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.183e-12
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)4.238e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.8e-19
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.801e-19
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.802e-19
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.525e-15
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)9.294e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.24e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.701e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.383e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.358e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.328e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.047e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.324e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.829e-15
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)7.312e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)8.924e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)4.409e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)4.409e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.183e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.183e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)9.415e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.238e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.238e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.238e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.238e-13
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.902e-12
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)6.577e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)8.769e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.35e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.075e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.802e-19
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.802e-19
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.802e-19
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.47e-15
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.802e-19
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.802e-19
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.25e-17
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.095e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.095e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.095e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.095e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.79e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)9.897e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.68e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.854e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.854e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.883e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.259e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.883e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.883e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.164e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.735e-14
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.782e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.667e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.454e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)5.211e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.952e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)9.525e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)9.525e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)6.804e-11