Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00882

Metabolite ID
P00882
Deionized mass
173.1069 Da
Average m/z
174.1124
Average RT
3.7008
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.72e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.191e-13
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)1.383e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.133e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.578e-14
Glyma.17G251200 hypothetical protein NA 2Chr17:40605249–40607536 (+)5.287e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)3.441e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.72e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)4.228e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.698e-14
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.494e-17
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)4.459e-12
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)3.556e-14
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)3.556e-14
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)3.556e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.752e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)6.451e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.191e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.191e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.995e-14
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)1.383e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)1.383e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.75e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.917e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.353e-14
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)3.015e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.008e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.008e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.698e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.984e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.984e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.984e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.984e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.994e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.79e-14
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)9.052e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.332e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.114e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.114e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.517e-14
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)8.506e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.942e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.421e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.949e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.561e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.077e-12
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)4.319e-14
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)4.319e-14
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.704e-11
Glyma.17G251700 hypothetical protein NA 1Chr17:40625907–40628028 (-)8.702e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)5.094e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)5.094e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)6.072e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.592e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.734e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.734e-14
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.138e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.803e-12
Glyma.20G123100 hypothetical protein AT2G01110:APG2:Sec-independent periplasmic protein translocase 1Chr20:36592639–36595961 (+)5.217e-11