Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00877

Metabolite ID
P00877
Deionized mass
183.1238 Da
Average m/z
184.1307
Average RT
3.6997
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
134
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

134 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 4Chr03:2423540–2428634 (-)3.235e-19
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)2.206e-13
Glyma.17G217900 hypothetical protein NA 4Chr17:36771760–36778616 (-)6.633e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 3Chr17:36319785–36329259 (-)6.758e-14
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)5.048e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.96e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)9.611e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.39e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.39e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.556e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.685e-12
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)7.586e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)7.633e-12
Glyma.16G138800 hypothetical protein NA 2Chr16:29609432–29615000 (+)5.56e-12
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 2Chr16:30388030–30390647 (-)1.801e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.009e-15
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.25e-11
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)6.571e-15
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)6.758e-14
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.478e-12
Glyma.01G021000 hypothetical protein NA 1Chr01:2122589–2125447 (+)2.974e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)4.301e-12
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)1.114e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)1.114e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)1.114e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.114e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.611e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.367e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.729e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.965e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.381e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.485e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.925e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.925e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.925e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.304e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.621e-13
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)6.277e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.804e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.118e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.262e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.364e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.364e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.178e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.25e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.25e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.64e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.896e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.896e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.036e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.941e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)5.395e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)5.395e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.309e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.609e-11
Glyma.08G303300 hypothetical protein NA 1Chr08:42134782–42139026 (+)1.056e-13
Glyma.08G303400 hypothetical protein NA 1Chr08:42139097–42147365 (+)1.056e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.859e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)9.723e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.076e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)5.708e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.988e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)9.345e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.973e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.534e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.534e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.534e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.534e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.909e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.673e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.079e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.079e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.972e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.972e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.446e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.938e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.938e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)9.126e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.611e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.981e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.981e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.39e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.891e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.685e-12
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)2.231e-11
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 1Chr14:43661177–43665659 (+)8.239e-11
Glyma.14G177500 hypothetical protein AT3G13620:PUT4:Amino acid permease family protein 1Chr14:43740577–43742476 (-)5.302e-11
Glyma.14G179000 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr14:44030814–44034325 (+)2.978e-12
Glyma.14G179200 hypothetical protein AT4G24380:AT4G24380:dihydrofolate reductase 1Chr14:44060802–44063722 (+)2.978e-12
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)9.9e-14
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.063e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.32e-17
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.613e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.32e-17
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.32e-17
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.986e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.363e-15
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)7.633e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.75e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.136e-11
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)2.317e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.183e-11
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)5.512e-13
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)5.512e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.709e-17
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 1Chr16:30434508–30475458 (-)5.4e-11
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)5.4e-11
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)4.054e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.538e-18
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.582e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.538e-18
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.25e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.537e-17
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)8.948e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.638e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.521e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)7.787e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.229e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.229e-11
Glyma.17G212200 hypothetical protein NA 1Chr17:35064075–35065120 (-)7.128e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)8.634e-11
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)3.072e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)3.906e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.024e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)4.163e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)4.602e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)4.648e-12
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)8.907e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)4.658e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.049e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)6.708e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.956e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.956e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)8.203e-11