Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00865

Metabolite ID
P00865
Deionized mass
333.1021 Da
Average m/z
334.1098
Average RT
3.6989
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)4.786e-17
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.766e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.66e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.659e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.912e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.513e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.857e-12
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)8.057e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.91e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.635e-11
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)7.063e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.324e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)4.62e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.593e-17
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.003e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.531e-16
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.081e-16
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)4.475e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.919e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)8.828e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)5.722e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)5.722e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)5.722e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)5.722e-11
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)4.895e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.866e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.431e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.018e-14
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)4.646e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)3.261e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)2.889e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)9.079e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.539e-11
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 1Chr09:5901280–5902349 (+)9.013e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.176e-12
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)8.865e-13
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.102e-12
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)5.95e-11
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)2.044e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.47e-14
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.338e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.713e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.911e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.466e-11
Glyma.11G147500 hypothetical protein AT5G60550:GRIK2:geminivirus rep interacting kinase 2__AT3G45240:GRIK1:geminivirus rep interacting kinase 1 1Chr11:11379868–11385928 (-)1.141e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)2.214e-12
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)1.121e-12
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)9.151e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.208e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.208e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.916e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.21e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.041e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.041e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.041e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)4.979e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.557e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)8.978e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.66e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.159e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.096e-15
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.532e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)1.662e-11
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)5.631e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.271e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.798e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)7.074e-11
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 1Chr16:33322352–33330062 (+)2.005e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.167e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.343e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.55e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)5.127e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.489e-13