Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00778

Metabolite ID
P00778
Deionized mass
122.0460 Da
Average m/z
123.0534
Average RT
3.6894
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G207100 hypothetical protein AT1G73990:SPPA:signal peptide peptidase 2Chr06:19963095–19969940 (-)3.546e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)5.245e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 2Chr08:8768854–8772973 (-)2.154e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)9.581e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.104e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.048e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.295e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.043e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)7.878e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)9.832e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.825e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.179e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.179e-11
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)6.569e-11
Glyma.06G204900 hypothetical protein AT1G74120:AT1G74120:Mitochondrial transcription termination factor family protein 1Chr06:19353866–19354929 (+)6.815e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)1.568e-12
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)1.568e-12
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)1.568e-12
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)1.568e-12
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)1.568e-12
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)1.568e-12
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)1.568e-12
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)1.568e-12
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)1.568e-12
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)1.568e-12
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)1.159e-12
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)1.159e-12
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)1.159e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.941e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.526e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.941e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.941e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.526e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.387e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.617e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.439e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)2.628e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)2.628e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.445e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.58e-12
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)5.25e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.125e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.125e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.125e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.125e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.47e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.025e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.118e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.504e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.255e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.255e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.255e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.255e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.731e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.731e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.471e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.048e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.483e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.737e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.83e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.46e-11