Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00724

Metabolite ID
P00724
Deionized mass
322.0876 Da
Average m/z
323.0934
Average RT
3.6800
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.408e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.582e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.017e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.179e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.179e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.179e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)2.127e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)7.216e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.409e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)2.984e-14
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)6.575e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.892e-15
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)5.314e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.879e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)9.778e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.725e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.833e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)2.054e-13
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)9.638e-23
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.4e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.524e-14
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)4.148e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.582e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.582e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.017e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.017e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.017e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.017e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.935e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.235e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.105e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.105e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.815e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.179e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.179e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.179e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.179e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.179e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.706e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.706e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.706e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.51e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)1.962e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.426e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.291e-13
Glyma.16G020900 hypothetical protein NA 1Chr16:1932165–1935289 (-)5.086e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)7.525e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)1.119e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.243e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.243e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.587e-11
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)2.834e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)2.834e-11
Glyma.18G226200 hypothetical protein AT4G00750:AT4G00750:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr18:51454812–51459765 (-)3.299e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.354e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.354e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.361e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.249e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.519e-13