Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00635

Metabolite ID
P00635
Deionized mass
301.0770 Da
Average m/z
302.0853
Average RT
3.5956
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.737e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.112e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.115e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.737e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.218e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.218e-11
Glyma.01G230400 hypothetical protein AT2G40935:AT2G40935:PLAC8 family protein 1Chr01:55782953–55786502 (+)2.13e-12
Glyma.01G230800 hypothetical protein AT4G10050:AT4G10050:esterase/lipase/thioesterase family protein 1Chr01:55803995–55808033 (+)1.867e-11
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)3.044e-12
Glyma.01G231900 hypothetical protein AT1G71500:AT1G71500:Rieske (2Fe-2S) domain-containing protein 1Chr01:55869836–55872417 (+)1.599e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)6.271e-13
Glyma.01G234300 hypothetical protein AT5G16680:AT5G16680:RING/FYVE/PHD zinc finger superfamily protein 1Chr01:56040889–56049889 (-)3.054e-11
Glyma.01G235200 hypothetical protein AT1G05460:SDE3:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr01:56103784–56110667 (-)6.984e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.628e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)7.868e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.374e-12
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)3.679e-12
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)3.679e-12
Glyma.06G276300 hypothetical protein NA 1Chr06:46741410–46744086 (-)1.489e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.542e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)3.915e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.064e-17
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.065e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.918e-15
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.086e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)6.319e-14
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)1.769e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)1.769e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.201e-12
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)1.094e-11
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)3.556e-11
Glyma.11G185000 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25310949–25318127 (+)1.674e-12
Glyma.11G185200 hypothetical protein AT4G33790:CER4:Jojoba acyl CoA reductase-related male sterility protein 1Chr11:25361462–25369894 (+)1.674e-12
Glyma.11G185300 hypothetical protein AT3G44540:FAR4:fatty acid reductase 4 1Chr11:25389935–25398374 (-)1.674e-12
Glyma.11G185500 hypothetical protein AT5G20890:AT5G20890:TCP-1/cpn60 chaperonin family protein 1Chr11:25416977–25424958 (-)1.674e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.152e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.068e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.068e-12
Glyma.13G053000 hypothetical protein AT3G02230:RGP1:reversibly glycosylated polypeptide 1 1Chr13:15046821–15050021 (+)7.44e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.112e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)6.514e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)7.15e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)7.15e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.086e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.313e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.086e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.086e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.182e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)6.195e-15
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.57e-11
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.071e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.911e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.864e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.468e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.11e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.568e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.568e-13
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.216e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.641e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.216e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)1.216e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)4.29e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.682e-11
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)4.705e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.301e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.301e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.957e-14