Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00574

Metabolite ID
P00574
Deionized mass
587.0511 Da
Average m/z
588.0609
Average RT
3.5012
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.854e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.598e-11
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)3.652e-12
Glyma.08G148700 hypothetical protein NA 2Chr08:11384601–11387727 (-)6.133e-14
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr09:5571201–5579976 (-)5.646e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.069e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.069e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)4.866e-13
Glyma.01G022800 hypothetical protein AT5G65490:AT5G65490:suppressor-like protein 1Chr01:2296901–2303966 (+)6.543e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)6.006e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)4.823e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.048e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.067e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.62e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)8.821e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.942e-15
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)3.329e-13
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)3.329e-13
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)3.202e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.539e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.539e-16
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)5.644e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.994e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.281e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)6.963e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)6.963e-11
Glyma.09G060100 hypothetical protein AT5G57160:ATLIG4:DNA ligase IV 1Chr09:5561072–5570789 (+)9.068e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.479e-16
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.415e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.415e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.415e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.415e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.376e-12
Glyma.11G122500 hypothetical protein AT1G49430:LACS2:long-chain acyl-CoA synthetase 2 1Chr11:9336389–9344401 (+)8.536e-11
Glyma.11G122700 hypothetical protein NA 1Chr11:9354319–9356396 (-)2.372e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)4.151e-13
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)1.526e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.904e-16
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.904e-16
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.904e-16
Glyma.12G195200 hypothetical protein NA 1Chr12:35670266–35671761 (-)3.422e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.476e-13
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)5.096e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.135e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.135e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.069e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)7.346e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)7.346e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)7.346e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.678e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)2.286e-12
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)3.405e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.823e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.81e-15
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.371e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.854e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.794e-11
Glyma.16G158300 hypothetical protein AT5G43140:AT5G43140:Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 1Chr16:31859405–31862567 (+)3.114e-12
Glyma.16G158400 hypothetical protein AT5G48100:TT10:Laccase/Diphenol oxidase family protein 1Chr16:31863760–31867327 (-)3.114e-12
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)2.274e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.38e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.38e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.14e-11