Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00453

Metabolite ID
P00453
Deionized mass
258.0695 Da
Average m/z
259.0768
Average RT
3.3374
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.639e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.261e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.328e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)8.527e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.75e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.944e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.944e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)8.682e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.807e-13
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)6.434e-12
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)4.166e-11
Glyma.03G017500 hypothetical protein NA 1Chr03:1761083–1762800 (+)7.446e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)6.078e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.036e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.825e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)9.843e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.799e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.58e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.089e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.222e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.112e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.58e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.58e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.58e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.003e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.003e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.118e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.118e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)8.699e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.904e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.516e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.83e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.573e-13
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)1.699e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.793e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.69e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)2.21e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.144e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.144e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.452e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.175e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.547e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.547e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.329e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.851e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.851e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.851e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.586e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.066e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.198e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.198e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.198e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.616e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.232e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.35e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.013e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.35e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.35e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.175e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.527e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.223e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.299e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.299e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.096e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.75e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)5.237e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)3.874e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)5.237e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)5.237e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.068e-12
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.549e-11
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)5.895e-12
Glyma.18G299500 hypothetical protein AT2G43160:AT2G43160:ENTH/VHS family protein 1Chr18:57741567–57749794 (+)5.581e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.269e-12