Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00334

Metabolite ID
P00334
Deionized mass
249.1202 Da
Average m/z
250.1261
Average RT
3.2177
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
77
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

77 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.917e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.729e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.067e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.167e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)3.214e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.373e-16
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.984e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.181e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.917e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)5.743e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.021e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.405e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.315e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.01e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)4.48e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.618e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.682e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.682e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.682e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)9.611e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.904e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.282e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.201e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.982e-13
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)2.867e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)2.684e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.067e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.067e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.067e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.067e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.669e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.669e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.566e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.079e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.161e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)8.363e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.145e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.725e-11
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)1.14e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)1.14e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)5.557e-13
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)1.405e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)1.405e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.954e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.889e-13
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)4.888e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)1.873e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)7.913e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.722e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.722e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.675e-16
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.984e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.514e-15
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)9.218e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.664e-13
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)5.166e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.042e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.859e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.042e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.042e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.007e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)3.326e-14
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.159e-13
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.729e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.729e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.729e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.729e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.455e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.454e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.269e-12
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)5.194e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.249e-14
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.261e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.775e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)9.262e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)4.09e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.309e-13