Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00007

Metabolite ID
P00007
Deionized mass
488.7949 Da
Average m/z
489.8019
Average RT
3.0235
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
134
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

134 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)2.315e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.985e-12
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)8.664e-11
Glyma.14G171400 hypothetical protein NA 3Chr14:42398866–42404627 (+)2.711e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)1.254e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)3.189e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)3.21e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)9.955e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)7.212e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.539e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.445e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.344e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.415e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.878e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.904e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)7.179e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)2.858e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)4.842e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.464e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.08e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.004e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.067e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.028e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.028e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.028e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.028e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.028e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.028e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.028e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)3.189e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.324e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.324e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.129e-15
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.507e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.897e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)3.96e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)6.238e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)5.394e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.231e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.355e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.888e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.135e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.509e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.509e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.257e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.342e-17
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.342e-17
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.342e-17
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)2.726e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.168e-13
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.813e-13
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.813e-13
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.813e-13
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.813e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.126e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.225e-21
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.958e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)4.001e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.975e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.975e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.975e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)4.586e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)2.393e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)3.574e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.985e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.985e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.15e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)8.176e-13
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)8.176e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.089e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)8.428e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)7.636e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.539e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.539e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.539e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.539e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.882e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.882e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.155e-13
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)8.665e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)8.665e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.671e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.471e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.817e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.817e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.297e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.073e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.193e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.694e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.694e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.694e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.694e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.663e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.663e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.033e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.033e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.17e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.17e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.051e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.638e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.638e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.24e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.641e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.641e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.641e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)8.013e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.209e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.331e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)2.711e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.344e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.643e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.475e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.643e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.643e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.863e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.165e-15
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)7.728e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)1.261e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.579e-12
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)9.881e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.625e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.672e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.597e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.597e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.611e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.611e-13
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.544e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.436e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.436e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.051e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.292e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.49e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)5.208e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.453e-12