Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P00005

Metabolite ID
P00005
Deionized mass
110.9599 Da
Average m/z
111.9666
Average RT
3.0216
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
162
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

162 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)3.604e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.256e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)8.56e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)7.715e-13
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)2.399e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)7.217e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.706e-14
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.587e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.587e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.587e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.986e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)8.057e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.198e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.198e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.084e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.784e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)7.47e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.518e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)8.241e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)8.707e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.256e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.91e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.8e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)2.399e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.792e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.792e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.279e-12
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)5.923e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.559e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.285e-17
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.559e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.68e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)5.05e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.015e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.022e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.361e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.768e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.768e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.245e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.133e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.133e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.133e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)4.267e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.039e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.879e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.693e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.157e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.147e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.67e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.591e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)2.422e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.389e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)1.974e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)6.081e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.207e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.38e-12
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)1.573e-11
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)1.634e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.706e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.706e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.706e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.706e-14
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)8.246e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)2.337e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.419e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)8.523e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.92e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.41e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.629e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.587e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.587e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.587e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.587e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.587e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)9.041e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.948e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.948e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.288e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.288e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.288e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.288e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.351e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.654e-13
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)2.38e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.938e-12
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)5.028e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.145e-16
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)9.867e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.964e-16
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.625e-15
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.625e-15
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.625e-15
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.625e-15
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)8.931e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.037e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.134e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.56e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.476e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.749e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.749e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.749e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.139e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.139e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.769e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.769e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.333e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.333e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.318e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.871e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.871e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.198e-14
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)1.273e-11
Glyma.13G138300 hypothetical protein AT2G37130:AT2G37130:Peroxidase superfamily protein 1Chr13:25095882–25099473 (-)1.432e-11
Glyma.13G149700 hypothetical protein AT3G10040:AT3G10040:sequence-specific DNA binding transcription factor 1Chr13:26321941–26324172 (+)2.075e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.278e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)8.76e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.877e-13
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)6.903e-11
Glyma.14G132100 hypothetical protein NA 1Chr14:22626936–22629212 (+)1.137e-12
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)6.618e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.602e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.715e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.046e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.724e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.046e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.046e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.14e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.449e-13
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)8.13e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)8.13e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.381e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.381e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.886e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.736e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.266e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.191e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.25e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.546e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)6.504e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)6.504e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.204e-15
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.894e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)7.715e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.977e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.977e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.051e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.051e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)8.422e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.806e-14
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)8.241e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.081e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.668e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.347e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.966e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.661e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.205e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.206e-16
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)9.037e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.631e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.021e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.502e-14
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)2.143e-11