SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

Gene Associated metabolites Research resources

GENE DETAIL · Glycine max

Glyma.17G215800

Description Aberrant root formation protein 4

Gene interval Chr17:36328551–36338097 (+), Wm82.a2.v1 · 1-based inclusive

Arabidopsis ortholog AT5G11030:ALF4:aberrant root formation protein

Genome context

Explore gene–feature relationships using Overlap or Within ±5 kb. Scope definitions

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Associated metabolite features665Overlap

Maximum supporting SNP records2

Features with ≥2 supporting SNP records665

Supporting SNP records satisfy P < 10⁻¹⁰ and the selected positional scope. Counts cover the 30345 features with indexed GWAS data.

Additional descriptive statistic

Mean supporting SNP records per associated feature: 2.

Research resources

Follow this gene identifier to compare annotations, examine protein function and find supporting literature.

SoyBase ↗Gene models and soybean annotations
NCBI Gene ↗Gene records, sequences and cross-references
UniProt ↗Protein function, domains and annotation evidence
PubMed ↗Publications mentioning this identifier

These links search the displayed identifier. Check the organism, genome assembly and evidence in the destination record.

Compare gene models, expression and reported orthologs

SoyBase gene-name translator ↗SoyBase expression resources ↗Legume Information System ↗

Arabidopsis IDs in the supplied annotation

AT5G11030NCBI Gene ↗UniProt ↗

Use expression and ortholog evidence to develop a testable hypothesis. The linked resources do not establish the function of this soybean gene in the measured samples.

Associated metabolites

Browse associated features and open their GWAS evidence or compound candidates.

665 matching features · page 44 of 67

Metabolite ID	Candidate annotation	Deionized mass (Da)	Supporting SNP records	Minimum P
P29735	2-Ketobutyric acid	102.0314	2	2.735e-11
P29828	4'-Oxonebramine	304.1730	2	2.009e-11
P29839	zygophyloside F	874.4037	2	5.025e-11
P29935	Acantrifoside A	942.5143	2	9.972e-14
P29985	(+)-Cheimonophyllal	282.1430	2	6.879e-11
P30000	N-(1-methyl-2-hydroxy-2-phenyl-ethyl)-5Z,8Z,11Z,14Z-eicosatetraenoyl amine	437.3308	2	6.957e-12
P30073	gamma-L-Glutamyl-S-(hercyn-2-yl)-L-cysteine S-oxide	461.1614	2	5.908e-11
P30082	[(2S,3R)-2-Amino-3-hydroxybutanoyl] (2S)-pyrrolidine-2-carboxylate	216.1129	2	2.325e-11
P30089	Glycochenodeoxycholic acid 3-glucuronide	625.3451	2	5.029e-11
P30204	Theasaponin C1	1174.5741	2	2.089e-11