SNP and gene associations use P < 10⁻¹⁰. Change threshold · Counts cover features with indexed GWAS data; — means unavailable.

GeneAssociated metabolitesResearch resources

GENE DETAIL · Glycine max

Glyma.07G129400

Description hypothetical protein

Gene interval Chr07:15397826–15401368 (-), Wm82.a2.v1 · 1-based inclusive

Arabidopsis ortholog AT3G02370:AT3G02370:tRNA-splicing endonuclease subunit__AT3G57360:AT3G57360:tRNA-splicing endonuclease subunit

Genome context

Explore gene–feature relationships using Overlap or Within ±5 kb. Scope definitions

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Associated metabolite features15Overlap
Maximum supporting SNP records1
Features with ≥2 supporting SNP records0

Supporting SNP records satisfy P < 10⁻¹⁰ and the selected positional scope. Counts cover the 30345 features with indexed GWAS data.

Additional descriptive statistic

Mean supporting SNP records per associated feature: 1.

Research resources

Follow this gene identifier to compare annotations, examine protein function and find supporting literature.

These links search the displayed identifier. Check the organism, genome assembly and evidence in the destination record.

Compare gene models, expression and reported orthologs

SoyBase gene-name translator ↗SoyBase expression resources ↗Legume Information System ↗

Arabidopsis IDs in the supplied annotation

Use expression and ortholog evidence to develop a testable hypothesis. The linked resources do not establish the function of this soybean gene in the measured samples.

Associated metabolites

Browse associated features and open their GWAS evidence or compound candidates.

15 matching features · page 2 of 2

Metabolite IDCandidate annotationDeionized mass (Da)Supporting SNP recordsMinimum P
P49831 alpha-Calacorene 200.1550 17.718e-11
P51002 (-)-Indolactam-V 301.1782 17.643e-11
P52035 cis-Communal 286.2267 14.158e-11
P52230 cis-Communal 286.2273 11.759e-11
P52996 Evodone 164.0825 17.884e-11