Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51002

Metabolite ID
P51002
Deionized mass
301.1782 Da
Average m/z
302.1853
Average RT
27.3519
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)5.494e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)3.795e-16
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 2Chr07:15404178–15410144 (-)1.206e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.105e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)3.22e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.546e-15
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.827e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.956e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.272e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.887e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.596e-14
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)7.487e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)7.487e-12
Glyma.07G129400 hypothetical protein AT3G02370:AT3G02370:tRNA-splicing endonuclease subunit__AT3G57360:AT3G57360:tRNA-splicing endonuclease subunit 1Chr07:15397826–15401368 (-)7.643e-11
Glyma.07G129700 hypothetical protein AT4G29680:AT4G29680:Alkaline-phosphatase-like family protein 1Chr07:15411976–15413873 (-)7.643e-11
Glyma.07G129900 hypothetical protein AT2G06925:PLA2-ALPHA:Phospholipase A2 family protein 1Chr07:15420011–15421954 (-)1.882e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)9.855e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.193e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.623e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.251e-16
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.027e-15
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.027e-15
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.027e-15
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.027e-15
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)9.753e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.419e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.976e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.976e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.518e-13
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.372e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.372e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.674e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.029e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)5.494e-11
Glyma.18G017600 hypothetical protein AT4G39850:ABCD1:peroxisomal ABC transporter 1 1Chr18:1248018–1259605 (-)4.329e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.686e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.686e-14
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)5.275e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)7.951e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)7.207e-12