Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P55537

Metabolite ID
P55537
Deionized mass
462.1000 Da
Average m/z
463.1061
Average RT
31.9225
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.446e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.467e-11
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)6.542e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.422e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)2.829e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.076e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)9.08e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.265e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.518e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.057e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.368e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)1.615e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.807e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)1.703e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.938e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.446e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.446e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.446e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.446e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)4.379e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.646e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.646e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.646e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.646e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.207e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.275e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.545e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.219e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.022e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)5.665e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.346e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.182e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.422e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)8.68e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)5.028e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)5.028e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.82e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)4.457e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.892e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.892e-13
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)3.364e-16
Glyma.16G028200 hypothetical protein AT2G39780:RNS2:ribonuclease 2 1Chr16:2733624–2740420 (-)6.762e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.764e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.775e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.775e-11
Glyma.18G040000 GAI AT1G66350:RGL1:RGA-like 1__AT3G03450:RGL2:RGA-like 2 1Chr18:3278869–3281985 (-)4.259e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)4.116e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.685e-14