Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P55371

Metabolite ID
P55371
Deionized mass
656.2526 Da
Average m/z
657.2607
Average RT
31.7556
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.14G135400 hypothetical protein AT2G24570:WRKY17:WRKY DNA-binding protein 17 2Chr14:23729201–23732285 (-)8.097e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.086e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.497e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.283e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.6e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.719e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.156e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.074e-12
Glyma.03G034200 hypothetical protein NA 1Chr03:3989072–3993561 (+)1.766e-11
Glyma.03G036500 WNK5 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr03:4402746–4408323 (+)4.024e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.561e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.214e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.455e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.455e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.259e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.421e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.421e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.421e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.254e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.303e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.303e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.303e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.757e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.729e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.414e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.997e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.997e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.997e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.997e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.674e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.07e-13
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)4.475e-11
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)3.999e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.398e-12
Glyma.14G135100 hypothetical protein AT4G31540:EXO70G1:exocyst subunit exo70 family protein G1 1Chr14:23623422–23626499 (-)2.104e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.086e-11
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)5.18e-11
Glyma.14G149700 hypothetical protein AT1G77590:LACS9:long chain acyl-CoA synthetase 9 1Chr14:32271989–32301104 (+)3.076e-12
Glyma.14G149900 hypothetical protein NA 1Chr14:32305914–32312520 (-)9.632e-12
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)2.335e-13
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)2.758e-13
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)7.9e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.9e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.112e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.373e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.112e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.112e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.209e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.129e-13
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)6.906e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)6.905e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)2.911e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.965e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.964e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)7.759e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)8.481e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.429e-11
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)1.687e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)7.278e-11
Glyma.18G269600 hypothetical protein NA 1Chr18:55329219–55333846 (+)2.858e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)4.178e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.471e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.624e-11