Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P55290

Metabolite ID
P55290
Deionized mass
640.2378 Da
Average m/z
641.2515
Average RT
31.7018
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)4.163e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)1.321e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.582e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.582e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)5.115e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.604e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.238e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.368e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.428e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.332e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.432e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.52e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.162e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.724e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.722e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.722e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.722e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.722e-13
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)7.989e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.526e-13
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)7.989e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.234e-15
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.232e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.12e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.833e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.833e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.833e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.833e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)5.195e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.251e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.251e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.251e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)5.13e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)8.132e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.922e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.922e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.783e-11
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)9.449e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.149e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.821e-11
Glyma.16G053400 hypothetical protein AT3G27000:ARP2:actin related protein 2 1Chr16:5187313–5196238 (-)8.987e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)4.952e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.408e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.641e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)6.732e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.364e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.064e-12