Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P55033

Metabolite ID
P55033
Deionized mass
117.0788 Da
Average m/z
118.0853
Average RT
31.5616
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)2.365e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.12e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.541e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.011e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.55e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.68e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.68e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)6.971e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.919e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.935e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.729e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)6.551e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.185e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.185e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.185e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.265e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.441e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.441e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.787e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.122e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)9.868e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)5.556e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)8.592e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)9.401e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.023e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.023e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)5.903e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.365e-16
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.526e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.011e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.1e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.55e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.932e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.932e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.68e-13
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)1.54e-14
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)1.54e-14
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.576e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.576e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.97e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.819e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.97e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.97e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.911e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.191e-18
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)3.36e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.379e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.379e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.508e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)7.196e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.332e-14
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)8.346e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.169e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.168e-11