Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P55009

Metabolite ID
P55009
Deionized mass
284.2121 Da
Average m/z
285.2181
Average RT
31.5372
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.992e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)5.906e-11
Glyma.13G183400 hypothetical protein NA 2Chr13:29666942–29670201 (+)1.256e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.397e-20
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.156e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.142e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.162e-12
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)5.138e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)6.47e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.966e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.788e-12
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)9.298e-12
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)9.298e-12
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)3.48e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.464e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.964e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.231e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.752e-13
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.291e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)2.39e-11
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)5.45e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)3.413e-12
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)3.413e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)2.81e-12
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)8.334e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.363e-11
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)5.808e-14
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.992e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.992e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)5.84e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.349e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)5.751e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.438e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.437e-11
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)1.517e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.317e-15
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)8.714e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)5.493e-14
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)5.493e-14
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.308e-16
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.156e-15
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)3.348e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.142e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.193e-14
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.193e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.193e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.399e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.399e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)5.906e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)3.527e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.641e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.641e-12
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)1.042e-11
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)5.138e-11
Glyma.20G026300 hypothetical protein AT1G26560:BGLU40:beta glucosidase 40 1Chr20:2894580–2905241 (+)4.869e-13
Glyma.20G084500 hypothetical protein AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A 1Chr20:31666190–31674959 (-)1.506e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)3.254e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.684e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.737e-12