Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54982

Metabolite ID
P54982
Deionized mass
402.2976 Da
Average m/z
403.3039
Average RT
31.5037
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G114400 hypothetical protein AT4G25650:ACD1-LIKE:ACD1-like protein 4Chr08:8750828–8756629 (-)1.515e-12
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 2Chr05:37029299–37037313 (+)2.151e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)6.588e-13
Glyma.08G114500 hypothetical protein AT4G38500:AT4G38500:Sept9 (DUF616) 2Chr08:8757033–8762145 (+)1.515e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.431e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.236e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.236e-15
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)3.746e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.466e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.081e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.08e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.401e-11
Glyma.02G087800 hypothetical protein AT5G51110:AT5G51110:Transcriptional coactivator/pterin dehydratase 1Chr02:7676883–7680136 (-)6.783e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)8.507e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)1.066e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)9.055e-12
Glyma.05G182900 hypothetical protein NA 1Chr05:37056753–37057349 (-)2.151e-11
Glyma.05G183100 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr05:37059525–37070146 (-)2.151e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.374e-12
Glyma.06G258900 hypothetical protein NA 1Chr06:44382191–44386628 (+)8.511e-11
Glyma.06G285200 hypothetical protein AT2G31060:EMB2785:elongation factor family protein 1Chr06:47380397–47390651 (+)5.154e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)9.935e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)5.591e-13
Glyma.08G113400 hypothetical protein NA 1Chr08:8703339–8705594 (+)5.289e-11
Glyma.08G113600 hypothetical protein AT1G55320:AAE18:acyl-activating enzyme 18 1Chr08:8713767–8722379 (-)5.289e-11
Glyma.08G113700 Ubiquitin-conjugating enzyme COP10 AT3G13550:FUS9:Ubiquitin-conjugating enzyme family protein 1Chr08:8723285–8726038 (-)4.838e-11
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)7.595e-12
Glyma.08G114000 hypothetical protein AT5G46430:AT5G46430:Ribosomal protein L32e 1Chr08:8737686–8739958 (+)6.933e-11
Glyma.08G114200 hypothetical protein AT4G08810:SUB1:calcium ion binding protein 1Chr08:8743328–8745667 (-)1.515e-12
Glyma.08G114600 hypothetical protein NA 1Chr08:8763388–8766206 (-)1.774e-12
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)1.542e-12
Glyma.09G056400 hypothetical protein NA 1Chr09:5080364–5088515 (-)3.306e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.528e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)5.263e-15
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.952e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.266e-13
Glyma.09G210200 hypothetical protein AT1G31940:AT1G31940:cystic fibrosis transmembrane conductance regulator 1Chr09:43432969–43437575 (-)6.476e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)2.708e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.428e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.428e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.428e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.428e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.556e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.199e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.252e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.252e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.252e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.442e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.442e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.785e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.785e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.236e-15
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.52e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)8.211e-14
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)4.154e-13
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)4.154e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)9.85e-13
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)9.316e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.247e-14
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.978e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.462e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.462e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.263e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)3.263e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)2.644e-15
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)3.691e-14
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)6.668e-11
Glyma.18G299500 hypothetical protein AT2G43160:AT2G43160:ENTH/VHS family protein 1Chr18:57741567–57749794 (+)2.215e-11
Glyma.18G300500 hypothetical protein NA 1Chr18:57841316–57843280 (+)4.479e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)4.875e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.595e-12