Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54956

Metabolite ID
P54956
Deionized mass
213.1246 Da
Average m/z
214.1333
Average RT
31.4892
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)1.557e-13
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)4.105e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.675e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.675e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)9.593e-14
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.024e-17
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)5.595e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.247e-11
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)5.622e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.15e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.393e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.968e-11
Glyma.06G286200 hypothetical protein NA 1Chr06:47465164–47467099 (+)3.358e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.258e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.258e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)9.338e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.385e-19
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.782e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)4.274e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.745e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.745e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.469e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.469e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.469e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.469e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.585e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.288e-15
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.009e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.02e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.02e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.164e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.164e-13
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)2.599e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)1.071e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.325e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.082e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.004e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)6.122e-14
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.122e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.664e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.321e-18
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.205e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.944e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.903e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.174e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.252e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.508e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.347e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.125e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)1.679e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.566e-11
Glyma.20G098600 hypothetical protein AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 1Chr20:34184591–34191923 (+)3.844e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)8.444e-13