Overview Annotation GWAS Evidence Associated genes

P54882

Metabolite ID
P54882
Deionized mass
671.1545 Da
Average m/z
672.1618
Average RT
31.4189
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
143
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

143 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G136000 hypothetical protein NA 7Chr03:35138670–35188160 (-)3.854e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 6Chr16:30652378–30659548 (+)2.617e-15
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)3.126e-13
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.886e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.567e-16
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)4.847e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 2Chr06:49420013–49426780 (-)8.198e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.905e-14
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)2.722e-14
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)2.535e-11
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)1.649e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)6.966e-12
Glyma.01G019300 hypothetical protein NA 1Chr01:1865692–1868540 (-)4.561e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)6.31e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.799e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.799e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.068e-15
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.066e-13
Glyma.03G008300 hypothetical protein AT4G00400:GPAT8:glycerol-3-phosphate acyltransferase 8 1Chr03:801855–806650 (-)5.401e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.804e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.198e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.667e-18
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)1.497e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.427e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.797e-13
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)8.517e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.921e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)4.718e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.688e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.83e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.83e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.152e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.463e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.463e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.463e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.404e-16
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.865e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.865e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.865e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.094e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.935e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.935e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.935e-12
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)7.626e-12
Glyma.06G223100 hypothetical protein NA 1Chr06:29407485–29421245 (+)1.804e-11
Glyma.06G223300 hypothetical protein AT4G30860:SDG4:SET domain group 4 1Chr06:29529765–29549738 (+)6.324e-13
Glyma.06G224700 hypothetical protein NA 1Chr06:30524373–30529915 (-)6.324e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.683e-14
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)1.391e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.567e-16
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.567e-16
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.708e-11
Glyma.06G320800 IF7GT6 isoflavone 7-O-glucosyltransferase UGT6 NA 1Chr06:50951025–50956134 (-)7.246e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.013e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)4.246e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.976e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)6.109e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)7.827e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)4.766e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.472e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.905e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.905e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.905e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.905e-14
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)3.262e-13
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)3.262e-13
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)3.262e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.521e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.022e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.002e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)9.541e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.207e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.207e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.207e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.207e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.429e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.564e-15
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)6.538e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.907e-13
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)5.753e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)3.169e-12
Glyma.11G122500 hypothetical protein AT1G49430:LACS2:long-chain acyl-CoA synthetase 2 1Chr11:9336389–9344401 (+)1.258e-11
Glyma.11G122700 hypothetical protein NA 1Chr11:9354319–9356396 (-)1.32e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.917e-14
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)2.231e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.014e-16
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.014e-16
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.014e-16
Glyma.12G021200 hypothetical protein NA 1Chr12:1524303–1527258 (+)5.927e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.326e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)5.634e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.206e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.207e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.245e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.245e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.026e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.823e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.823e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.609e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.103e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.543e-16
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.809e-12
Glyma.14G193800 hypothetical protein NA 1Chr14:45860185–45866449 (+)1.263e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.372e-13
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.096e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.096e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.153e-11
Glyma.16G051900 hypothetical protein NA 1Chr16:5009359–5009660 (+)1.676e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.069e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.208e-15
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.022e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)6.736e-14
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)2.381e-14
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.749e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.201e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.814e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)3.713e-12
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)3.377e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)9.056e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.398e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.741e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.185e-11
Glyma.16G207700 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36739878–36743378 (-)9.989e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.203e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.847e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.335e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.335e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.602e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)5.992e-16
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.077e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.083e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.209e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.209e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.322e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.322e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)2.588e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)2.821e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)2.821e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)2.821e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.781e-11
Glyma.20G033600 hypothetical protein NA 1Chr20:4581093–4581402 (-)4.541e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.477e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.124e-11