Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54745

Metabolite ID
P54745
Deionized mass
666.4304 Da
Average m/z
667.4400
Average RT
31.2513
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 10Chr18:51471540–51498344 (+)7.336e-14
Glyma.04G107400 hypothetical protein AT2G20510:TIM44-1:translocase inner membrane subunit 44-1__AT2G36070:TIM44-2:translocase inner membrane subunit 44-2 2Chr04:11276495–11288391 (+)7.44e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.158e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.242e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.873e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.321e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.222e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.818e-11
Glyma.04G107100 hypothetical protein AT1G22060:AT1G22060:sporulation-specific protein 1Chr04:11239281–11250948 (-)7.44e-11
Glyma.04G107300 hypothetical protein AT1G36310:AT1G36310:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:11253648–11256731 (+)7.44e-11
Glyma.04G110600 hypothetical protein NA 1Chr04:12199550–12200299 (-)7.44e-11
Glyma.04G110700 hypothetical protein AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr04:12206027–12222024 (-)7.44e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.88e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.944e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.567e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.742e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.158e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.158e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.158e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.158e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.866e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.472e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.259e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.259e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.259e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.259e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.944e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.142e-12
Glyma.10G156300 hypothetical protein AT3G05210:ERCC1:nucleotide repair protein 1Chr10:39053531–39057116 (-)2.47e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.143e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.278e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.278e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.005e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.005e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.128e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.128e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.046e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.046e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.046e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.358e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.242e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)1.971e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.145e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.145e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.321e-12
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)2.556e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.007e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)1.947e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)9.996e-13
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)7.379e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.37e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)8.817e-11