Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54622

Metabolite ID
P54622
Deionized mass
94.0775 Da
Average m/z
95.0850
Average RT
31.1287
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.385e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.379e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.578e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.526e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)8.183e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)1.109e-11
Glyma.18G226300 hypothetical protein NA 2Chr18:51471540–51498344 (+)6.808e-11
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 2Chr18:51979095–51987062 (-)5.092e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.299e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)7.656e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.68e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.288e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)3.732e-12
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)9.889e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.385e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.385e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.385e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.385e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.99e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.99e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.486e-14
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)4.105e-11
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)4.105e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)4.105e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.082e-12
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)2.102e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)2.102e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.221e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.221e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.221e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.221e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.988e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.918e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.465e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.3e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.389e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.298e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.526e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)9.227e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)9.227e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)6.571e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)6.571e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.169e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)7.186e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)9.938e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)9.938e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)2.997e-12
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)6.494e-11
Glyma.18G230600 hypothetical protein AT3G61250:MYB17:myb domain protein 17 1Chr18:51934101–51937216 (-)2.246e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)5.449e-15
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)1.153e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)9.522e-11