Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54460

Metabolite ID
P54460
Deionized mass
566.2853 Da
Average m/z
567.2902
Average RT
31.0648
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.407e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.867e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)8.214e-12
Glyma.10G236000 hypothetical protein NA 2Chr10:46499079–46501955 (-)5.517e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.875e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)4.668e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)3e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.407e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)5.944e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.546e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.743e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.318e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.258e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.648e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.66e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.055e-13
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)8.324e-14
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.867e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.867e-13
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)9.192e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.372e-11
Glyma.10G235900 hypothetical protein AT1G55630:AT1G55630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr10:46494305–46498333 (-)1.078e-11
Glyma.10G236100 hypothetical protein AT5G52280:AT5G52280:Myosin heavy chain-related protein 1Chr10:46503152–46510614 (-)5.517e-15
Glyma.10G236800 hypothetical protein NA 1Chr10:46559759–46563487 (+)5.517e-15
Glyma.10G237600 hypothetical protein NA 1Chr10:46607534–46609838 (+)3.959e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.592e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.508e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.409e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.409e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.409e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.409e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.46e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.46e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.512e-12
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)5.426e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.462e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.539e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.875e-11
Glyma.15G019700 hypothetical protein AT3G21360:AT3G21360:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr15:1539104–1541259 (+)2.345e-11
Glyma.15G019800 hypothetical protein AT1G51940:LYK3:protein kinase family protein / peptidoglycan-binding LysM domain-containing protein 1Chr15:1540655–1547540 (-)2.345e-11
Glyma.15G020800 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr15:1605458–1610034 (-)4.933e-11
Glyma.15G021000 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr15:1616486–1626531 (-)4.933e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)9.136e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.492e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)2.923e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.437e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.055e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.055e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.989e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.503e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.132e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.25e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)2.456e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)4.994e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)3.037e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.216e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.216e-12
Glyma.20G094300 hypothetical protein NA 1Chr20:33753229–33754924 (-)8.945e-11
Glyma.20G094400 hypothetical protein AT5G02270:ABCI20:non-intrinsic ABC protein 9 1Chr20:33754119–33755970 (-)8.945e-11
Glyma.20G094500 hypothetical protein NA 1Chr20:33759417–33761555 (-)8.945e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)8.907e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.565e-12