Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54407

Metabolite ID
P54407
Deionized mass
353.1686 Da
Average m/z
354.1771
Average RT
31.0080
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.686e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.071e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.384e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.384e-14
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 2Chr13:31428112–31429431 (-)2.42e-12
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)2.451e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.495e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.495e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.692e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.349e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.504e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.208e-13
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)9.382e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)9.382e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)9.382e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)9.382e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)9.382e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)9.382e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)9.382e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)9.382e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)9.382e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)9.382e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)7.167e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.833e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)6.551e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)5.54e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.065e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.065e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.065e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.065e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.261e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.479e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.569e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.971e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.971e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.384e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.384e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.862e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)6.86e-12
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)7.906e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)5.525e-12
Glyma.18G300500 hypothetical protein NA 1Chr18:57841316–57843280 (+)1.282e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.624e-11