Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54366

Metabolite ID
P54366
Deionized mass
522.3882 Da
Average m/z
523.3955
Average RT
30.9656
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
39
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

39 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147300 hypothetical protein NA 3Chr08:11238871–11242682 (+)8.22e-14
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 2Chr04:50558708–50569783 (+)1.334e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2Chr04:50576216–50582296 (-)1.334e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)5.382e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.224e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.196e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)9.7e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)3.457e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.414e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.815e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.271e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.005e-11
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)1.592e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.986e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)7.405e-13
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)3.76e-13
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)2.647e-13
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)2.299e-11
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)9.309e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)4.587e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)7.423e-13
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.235e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.648e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.201e-12
Glyma.09G249800 hypothetical protein AT3G47390:PHS1:cytidine/deoxycytidylate deaminase family protein 1Chr09:47082637–47087385 (-)7.265e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)7.265e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.576e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.576e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.782e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.358e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.358e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.358e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.102e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.758e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.169e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.913e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.169e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.169e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.437e-11