Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54275

Metabolite ID
P54275
Deionized mass
362.1011 Da
Average m/z
363.1062
Average RT
30.8650
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.464e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.855e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.174e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.174e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)3.865e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.613e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.734e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.187e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.766e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.539e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)3.563e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.535e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.122e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.157e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.157e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.133e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.133e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.728e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.791e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.501e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.501e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.174e-13
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.14e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.633e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.406e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.633e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.633e-15
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)6.827e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.702e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.417e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)7.667e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)2.415e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.158e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)4.332e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.879e-15
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.434e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.434e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.536e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.536e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)9.422e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.28e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.054e-16