P54246
Metabolite ID
P54246
Deionized mass
607.5476 Da
Average m/z
608.5582
Average RT
30.8378
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.02G188300 | hypothetical protein | NA | 4 | Chr02:35008552–35027979 (-) | 7.125e-14 | |
| Glyma.17G218600 | hypothetical protein | NA | 3 | Chr17:36975400–36982812 (-) | 3.553e-11 | |
| Glyma.02G006500 | hypothetical protein | AT4G01660:ABC1:ABC transporter 1 | 2 | Chr02:693193–700260 (+) | 1.595e-11 | |
| Glyma.02G200700 | hypothetical protein | AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein | 2 | Chr02:38435454–38459254 (-) | 3.73e-14 | |
| Glyma.02G202100 | hypothetical protein | AT3G52610:AT3G52610:GATA zinc finger protein | 2 | Chr02:38707852–38719801 (+) | 4.699e-14 | |
| Glyma.06G313500 | hypothetical protein | NA | 2 | Chr06:50191600–50203098 (-) | 2.863e-12 | |
| Glyma.08G122200 | hypothetical protein | NA | 2 | Chr08:9416766–9429995 (-) | 3.409e-15 | |
| Glyma.08G122300 | hypothetical protein | AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 | 2 | Chr08:9435391–9437279 (+) | 3.409e-15 | |
| Glyma.08G123500 | hypothetical protein | NA | 2 | Chr08:9494946–9505931 (-) | 3.409e-15 | |
| Glyma.14G093100 | hypothetical protein | NA | 2 | Chr14:8654730–8655892 (-) | 4.353e-12 | |
| Glyma.16G031600 | hypothetical protein | NA | 2 | Chr16:2964569–2985013 (+) | 1.794e-12 | |
| Glyma.01G168800 | hypothetical protein | AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein | 1 | Chr01:50633986–50636589 (+) | 1.323e-11 | |
| Glyma.02G186700 | hypothetical protein | AT2G41530:SFGH:S-formylglutathione hydrolase | 1 | Chr02:34053264–34063869 (+) | 4.818e-11 | |
| Glyma.02G186800 | hypothetical protein | AT5G20950:AT5G20950:Glycosyl hydrolase family protein | 1 | Chr02:34273084–34276697 (+) | 4.818e-11 | |
| Glyma.02G187900 | hypothetical protein | NA | 1 | Chr02:34766792–34767584 (-) | 4.818e-11 | |
| Glyma.02G188000 | hypothetical protein | NA | 1 | Chr02:34824517–34828786 (+) | 4.818e-11 | |
| Glyma.02G189300 | hypothetical protein | NA | 1 | Chr02:35303379–35311640 (+) | 4.818e-11 | |
| Glyma.02G189700 | hypothetical protein | NA | 1 | Chr02:35649728–35657614 (-) | 4.818e-11 | |
| Glyma.02G191500 | hypothetical protein | AT3G10160:DFC:DHFS-FPGS homolog C | 1 | Chr02:36167451–36184853 (-) | 4.818e-11 | |
| Glyma.02G192200 | Purple acid phosphatase 16 | AT3G10150:PAP16:purple acid phosphatase 16 | 1 | Chr02:36328821–36337010 (+) | 2.911e-11 | |
| Glyma.02G193800 | hypothetical protein | AT5G06470:AT5G06470:Glutaredoxin family protein | 1 | Chr02:36706657–36712744 (-) | 2.066e-13 | |
| Glyma.02G195600 | hypothetical protein | AT3G05680:EMB2016:embryo defective 2016 | 1 | Chr02:36909270–36924536 (+) | 8.011e-11 | |
| Glyma.02G196300 | hypothetical protein | NA | 1 | Chr02:37188414–37189447 (-) | 8.011e-11 | |
| Glyma.02G200600 | hypothetical protein | AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 | 1 | Chr02:38432334–38436063 (+) | 3.73e-14 | |
| Glyma.02G201100 | hypothetical protein | AT5G06200:CASP4:Uncharacterized protein family (UPF0497) | 1 | Chr02:38497390–38499369 (-) | 3.73e-14 | |
| Glyma.02G201400 | hypothetical protein | AT5G06140:SNX1:sorting nexin 1 | 1 | Chr02:38539394–38547251 (+) | 3.73e-14 | |
| Glyma.02G289000 | hypothetical protein | AT5G54800:GPT1:glucose 6-phosphate/phosphate translocator 1 | 1 | Chr02:46898427–46902989 (+) | 3.975e-12 | |
| Glyma.02G290200 | hypothetical protein | AT3G06530:AT3G06530:ARM repeat superfamily protein | 1 | Chr02:46979277–47002042 (+) | 6.919e-13 | |
| Glyma.02G293100 | hypothetical protein | AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein | 1 | Chr02:47183443–47188007 (-) | 3.475e-13 | |
| Glyma.02G294000 | hypothetical protein | NA | 1 | Chr02:47237993–47240495 (+) | 7.382e-12 | |
| Glyma.02G294200 | hypothetical protein | AT3G20290:EHD1:EPS15 homology domain 1 | 1 | Chr02:47256480–47263517 (+) | 1.144e-12 | |
| Glyma.02G294500 | hypothetical protein | AT5G50850:MAB1:Transketolase family protein | 1 | Chr02:47272683–47277831 (-) | 6.527e-12 | |
| Glyma.02G294900 | hypothetical protein | AT5G55220:AT5G55220:trigger factor type chaperone family protein | 1 | Chr02:47300149–47306133 (+) | 5.135e-13 | |
| Glyma.02G295000 | hypothetical protein | AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein | 1 | Chr02:47306160–47312036 (-) | 5.135e-13 | |
| Glyma.04G084200 | hypothetical protein | AT2G25830:AT2G25830:YebC-like protein | 1 | Chr04:7137351–7146570 (-) | 4.748e-11 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 3.902e-11 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 3.902e-11 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 1.86e-12 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 2.464e-12 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 2.464e-12 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 2.464e-12 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 4.202e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 2.527e-12 | |
| Glyma.06G129400 | hypothetical protein | AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type | 1 | Chr06:10632042–10640023 (+) | 1.015e-11 | |
| Glyma.06G129800 | hypothetical protein | AT5G53030:AT5G53030:uncharacterized protein | 1 | Chr06:10667029–10669377 (+) | 6.414e-13 | |
| Glyma.06G130100 | hypothetical protein | AT3G49290:ABIL2:ABL interactor-like protein 2 | 1 | Chr06:10695256–10699675 (+) | 6.414e-13 | |
| Glyma.06G130300 | hypothetical protein | AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr06:10709045–10716245 (-) | 4.845e-13 | |
| Glyma.06G261900 | hypothetical protein | NA | 1 | Chr06:44875369–44879702 (-) | 9.663e-11 | |
| Glyma.08G114700 | hypothetical protein | AT3G13600:AT3G13600:calmodulin-binding family protein | 1 | Chr08:8768854–8772973 (-) | 1.383e-12 | |
| Glyma.08G117500 | hypothetical protein | AT4G18780:IRX1:cellulose synthase family protein | 1 | Chr08:9065033–9071774 (-) | 5.943e-11 | |
| Glyma.08G118400 | hypothetical protein | AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr08:9147404–9153858 (-) | 5.943e-11 | |
| Glyma.08G122500 | hypothetical protein | NA | 1 | Chr08:9441329–9445315 (-) | 3.409e-15 | |
| Glyma.08G122600 | hypothetical protein | NA | 1 | Chr08:9445153–9450502 (+) | 4.96e-11 | |
| Glyma.08G122700 | hypothetical protein | AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) | 1 | Chr08:9452604–9458932 (+) | 3.409e-15 | |
| Glyma.08G182000 | hypothetical protein | NA | 1 | Chr08:14601875–14604750 (+) | 2.78e-11 | |
| Glyma.08G182400 | hypothetical protein | NA | 1 | Chr08:14625596–14626713 (+) | 5.074e-13 | |
| Glyma.08G211800 | hypothetical protein | NA | 1 | Chr08:17104514–17105442 (-) | 3.251e-12 | |
| Glyma.09G058900 | hypothetical protein | NA | 1 | Chr09:5397968–5404650 (-) | 1.603e-12 | |
| Glyma.09G238200 | NIP2-1 | putative Si transporter NIP2-1 | NA | 1 | Chr09:46029192–46034136 (+) | 1.875e-11 |
| Glyma.09G251800 | hypothetical protein | AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein | 1 | Chr09:47220796–47224266 (+) | 4.001e-12 | |
| Glyma.10G238200 | hypothetical protein | AT5G07250:RBL3:RHOMBOID-like protein 3 | 1 | Chr10:46680865–46684088 (+) | 3.907e-14 | |
| Glyma.10G238300 | hypothetical protein | AT5G07240:IQD24:IQ-domain 24 | 1 | Chr10:46688122–46693051 (-) | 2.275e-12 | |
| Glyma.10G238700 | hypothetical protein | NA | 1 | Chr10:46721439–46725173 (+) | 2.275e-12 | |
| Glyma.10G239000 | hypothetical protein | NA | 1 | Chr10:46755702–46757579 (-) | 2.275e-12 | |
| Glyma.11G241400 | hypothetical protein | AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr11:33556332–33563163 (-) | 6.653e-12 | |
| Glyma.11G241900 | hypothetical protein | NA | 1 | Chr11:33589346–33594428 (-) | 6.653e-12 | |
| Glyma.13G161900 | PAP25 | purple acid phosphatase | AT5G34850:PAP26:purple acid phosphatase 26 | 1 | Chr13:27748190–27752685 (-) | 2.198e-12 |
| Glyma.14G177100 | hypothetical protein | AT1G22450:COX6B:cytochrome C oxidase 6B | 1 | Chr14:43661177–43665659 (+) | 1.026e-11 | |
| Glyma.15G009800 | hypothetical protein | NA | 1 | Chr15:753771–758859 (-) | 3.294e-13 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 2.493e-11 | |
| Glyma.16G105400 | hypothetical protein | AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr16:21357465–21364357 (-) | 5.758e-11 | |
| Glyma.17G218700 | hypothetical protein | NA | 1 | Chr17:36986191–36991558 (-) | 3.553e-11 | |
| Glyma.17G257100 | hypothetical protein | AT1G75660:XRN3:5'-3' exoribonuclease 3 | 1 | Chr17:41113121–41125026 (+) | 3.421e-12 | |
| Glyma.19G119100 | hypothetical protein | AT3G03650:EDA5:Exostosin family protein | 1 | Chr19:37668759–37672434 (+) | 4.604e-12 | |
| Glyma.19G119200 | hypothetical protein | AT3G03630:CS26:cysteine synthase 26 | 1 | Chr19:37677773–37683394 (+) | 3.783e-11 | |
| Glyma.20G084500 | hypothetical protein | AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A | 1 | Chr20:31666190–31674959 (-) | 4.908e-11 | |
| Glyma.20G109600 | hypothetical protein | AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 | 1 | Chr20:35200934–35205885 (-) | 1.313e-11 | |
| Glyma.20G109800 | hypothetical protein | AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr20:35213258–35219502 (+) | 6.219e-13 | |
| Glyma.20G110000 | hypothetical protein | AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 | 1 | Chr20:35229423–35231861 (+) | 1.403e-11 | |
| Glyma.20G217100 | hypothetical protein | AT1G64640:ENODL8:early nodulin-like protein 8 | 1 | Chr20:45278452–45280126 (-) | 5.327e-12 |