Overview Annotation GWAS Evidence Associated genes

P54222

Metabolite ID
P54222
Deionized mass
671.1509 Da
Average m/z
672.1589
Average RT
30.8107
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
141
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

141 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 7Chr16:36856833–36863994 (-)6.167e-17
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)7.285e-13
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)2.163e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)4.295e-19
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.017e-14
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 3Chr16:36871978–36878151 (-)8.058e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.336e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.768e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)6.204e-13
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)1.13e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.279e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.36e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.281e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.281e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.033e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.042e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.893e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)6.684e-13
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 2Chr16:36776806–36778169 (+)2.339e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)6.592e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)6.8e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.45e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.45e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)7.037e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.273e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)8.869e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.194e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.037e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.276e-16
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.909e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.869e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.411e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.411e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.288e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.393e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.393e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.393e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.985e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.038e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.232e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.262e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.799e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.559e-13
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.805e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.805e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.805e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.863e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.185e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.185e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.89e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.838e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)8.725e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.836e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.343e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.836e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.835e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.343e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)5.891e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)5.891e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.608e-14
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.196e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.196e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)7.565e-12
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)3.877e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.035e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)2.786e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)2.786e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.53e-14
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.957e-12
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)2.846e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.901e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.615e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.908e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.436e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.708e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)2.651e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.286e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.286e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.145e-17
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.145e-17
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.822e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)2.121e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.49e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.49e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.273e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.251e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.36e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.459e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)5.403e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.017e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.212e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.401e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.401e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.281e-15
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.583e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.961e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.042e-11
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)3.135e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.893e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.218e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.683e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.218e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.218e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.014e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.912e-15
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)5.333e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.331e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.331e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)8.799e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.778e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.493e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.306e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.795e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.927e-15
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.532e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.523e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)5.845e-15
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)7.607e-16
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)3.231e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.719e-14
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)8.934e-14
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.336e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.696e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.696e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.079e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.079e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.723e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)6.592e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)2.133e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)2.194e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.033e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.951e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.715e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.442e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.441e-13
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)4.101e-11
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)4.101e-11
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)4.101e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.923e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.848e-11
Glyma.20G179600 hypothetical protein AT2G39220:PLP6:PATATIN-like protein 6__AT3G54950:pPLAIIIbeta:patatin-like protein 6 1Chr20:41714740–41719977 (-)9.225e-11