Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54132

Metabolite ID
P54132
Deionized mass
219.9995 Da
Average m/z
221.0050
Average RT
30.7148
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.799e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.298e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.294e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.876e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.876e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.075e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.799e-11
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)1.873e-19
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.842e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.351e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)5.678e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)5.678e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)5.678e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)5.678e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)5.678e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)5.678e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)5.678e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.518e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.689e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.435e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.144e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.397e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.397e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.135e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.221e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.221e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.221e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.699e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.957e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)4.222e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.056e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.267e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.363e-13
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)2.725e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)9.985e-11
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)8.732e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)1.858e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)1.858e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.298e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.298e-12
Glyma.08G150700 hypothetical protein AT2G44500:AT2G44500:O-fucosyltransferase family protein 1Chr08:11603469–11607610 (+)9.166e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.977e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.362e-16
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.015e-15
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.015e-15
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.015e-15
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.015e-15
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)3.445e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.942e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.942e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.294e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.904e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.065e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.065e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.876e-13
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.056e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.426e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.426e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.608e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.505e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.608e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.608e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.069e-14
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.913e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.143e-15
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)8.631e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)8.631e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.965e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)3.42e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.062e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.641e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.629e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.631e-12
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)6.657e-13
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)4.565e-14