Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54087

Metabolite ID
P54087
Deionized mass
600.2606 Da
Average m/z
601.2672
Average RT
30.6368
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
81
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

81 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)7.662e-17
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)9.287e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)5.051e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.546e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.546e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.088e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.489e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.655e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)4.297e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.631e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.448e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)5.735e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.09e-17
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.662e-17
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.231e-19
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.08e-18
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.08e-18
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.08e-18
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.367e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.094e-11
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)2.989e-11
Glyma.05G165300 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr05:35593651–35600917 (+)2.989e-11
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)2.989e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.161e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.594e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.696e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.696e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.696e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)5.421e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)5.421e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.546e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.546e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.534e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.063e-14
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.619e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.386e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.181e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.386e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.386e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.181e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.009e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)1.135e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.402e-11
Glyma.07G009600 hypothetical protein AT3G13860:HSP60-3A:heat shock protein 60-3A 1Chr07:718009–725377 (-)7.218e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.287e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.287e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.527e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.471e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.869e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.008e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.008e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.008e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.27e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.27e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.434e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.434e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.546e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.275e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.275e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)4.501e-14
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)4.501e-14
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)1.071e-11
Glyma.15G107800 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr15:8473049–8483746 (+)2.902e-11
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)3.648e-11
Glyma.15G111200 hypothetical protein AT1G11950:AT1G11950:Transcription factor jumonji (jmjC) domain-containing protein 1Chr15:8705907–8710609 (-)3.962e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.851e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.851e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.851e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.216e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.526e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.526e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.271e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.864e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.122e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.29e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.959e-11
Glyma.18G026200 hypothetical protein AT2G40150:TBL28:TRICHOME BIREFRINGENCE-LIKE 28__AT3G55990:ESK1:trichome birefringence-like protein (DUF828) 1Chr18:1953183–1957001 (-)8.444e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.672e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.672e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.212e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)4.14e-11