Overview Annotation GWAS Evidence Associated genes

P54058

Metabolite ID
P54058
Deionized mass
621.2533 Da
Average m/z
622.2579
Average RT
30.5909
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
14
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

14 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)4.815e-14
Glyma.05G162400 hypothetical protein NA 1Chr05:35357223–35358831 (+)4.631e-12
Glyma.05G162500 hypothetical protein NA 1Chr05:35371190–35375992 (+)4.631e-12
Glyma.05G162600 hypothetical protein NA 1Chr05:35376373–35378991 (+)2.224e-11
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)3.885e-11
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)3.569e-12
Glyma.15G108400 hypothetical protein AT1G11840:GLX1:glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 1Chr15:8534420–8539477 (-)2.181e-11
Glyma.15G108500 hypothetical protein NA 1Chr15:8535758–8538465 (+)2.181e-11
Glyma.15G109500 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr15:8591856–8593774 (-)9.77e-13
Glyma.15G111900 hypothetical protein NA 1Chr15:8769366–8777275 (-)6.726e-12
Glyma.15G112100 hypothetical protein AT4G04180:AT4G04180:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr15:8796403–8805644 (-)6.726e-12
Glyma.16G038900 hypothetical protein AT3G03790:AT3G03790:ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein 1Chr16:3666547–3676052 (+)5.51e-12
Glyma.16G039800 hypothetical protein NA 1Chr16:3730538–3733668 (-)4.071e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.336e-11