Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P54029

Metabolite ID
P54029
Deionized mass
194.1183 Da
Average m/z
195.1262
Average RT
30.5493
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.512e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)5.923e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)2.9e-13
Glyma.18G259000 hypothetical protein NA 2Chr18:54442402–54446789 (-)2.525e-12
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)1.397e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)1.912e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.983e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.548e-14
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)4.062e-13
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)1.693e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.512e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.512e-13
Glyma.06G320000 hypothetical protein AT1G05740:AT1G05740:FAM136A-like protein (DUF842) 1Chr06:50870241–50873816 (+)7.772e-13
Glyma.06G320100 hypothetical protein AT5G56290:PEX5:peroxin 5 1Chr06:50874167–50888925 (-)7.772e-13
Glyma.06G320500 hypothetical protein NA 1Chr06:50915085–50918194 (+)4.356e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.862e-15
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.423e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.851e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)2.294e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.851e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.226e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.226e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.226e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.226e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.027e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.108e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.123e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.879e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.879e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.879e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.879e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.142e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.142e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.447e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.447e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.167e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.93e-11
Glyma.18G257800 hypothetical protein NA 1Chr18:54346048–54349189 (+)1.551e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.833e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.241e-18
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.241e-18
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.37e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.701e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.224e-16