Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53865

Metabolite ID
P53865
Deionized mass
647.2528 Da
Average m/z
648.2580
Average RT
30.3836
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
38
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

38 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G182100 hypothetical protein NA 2Chr05:37003489–37004855 (-)1.156e-13
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 2Chr05:37029299–37037313 (+)8.668e-16
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.126e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.548e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.492e-11
Glyma.05G182900 hypothetical protein NA 1Chr05:37056753–37057349 (-)7.053e-15
Glyma.05G183100 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr05:37059525–37070146 (-)7.053e-15
Glyma.05G184500 hypothetical protein NA 1Chr05:37142869–37146009 (-)8.78e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)5.678e-13
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.795e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.527e-11
Glyma.06G289400 hypothetical protein AT2G20580:RPN1A:26S proteasome regulatory subunit S2 1A__AT4G28470:RPN1B:26S proteasome regulatory subunit S2 1B 1Chr06:47813934–47821512 (+)5.153e-11
Glyma.06G289600 hypothetical protein AT5G51740:AT5G51740:Peptidase family M48 family protein 1Chr06:47831855–47835534 (-)1.305e-11
Glyma.06G289900 hypothetical protein AT2G20590:AT2G20590:Reticulon family protein 1Chr06:47861573–47865518 (-)5.512e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.153e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.813e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.153e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.153e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.813e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.339e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)1.343e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)2.267e-12
Glyma.07G070900 hypothetical protein AT1G31870:AT1G31870:pre-mRNA-splicing factor of RES complex protein 1Chr07:6443135–6449037 (-)9.587e-12
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)8.431e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.171e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.171e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.06e-11
Glyma.15G037400 hypothetical protein AT5G59420:ORP3C:OSBP(oxysterol binding protein)-related protein 3C 1Chr15:2950291–2955686 (-)9.187e-11
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)5.505e-11
Glyma.15G120800 hypothetical protein AT5G47730:AT5G47730:Sec14p-like phosphatidylinositol transfer family protein 1Chr15:9552374–9557218 (-)3.957e-11
Glyma.15G121000 hypothetical protein NA 1Chr15:9563579–9565862 (+)3.405e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.467e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)4.14e-12
Glyma.16G064100 hypothetical protein NA 1Chr16:6322034–6325343 (-)1.689e-11
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)2.2e-11
Glyma.17G099300 hypothetical protein AT3G47610:AT3G47610:transcription regulator/ zinc ion binding protein 1Chr17:7838198–7840795 (-)2.453e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)2.718e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.542e-11