Overview Annotation GWAS Evidence Associated genes

P53858

Metabolite ID
P53858
Deionized mass
96.9598 Da
Average m/z
97.9675
Average RT
30.3764
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
2
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

2 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G116300 hypothetical protein AT4G35570:HMGB5:high mobility group B5__AT2G17560:HMGB4:high mobility group B4 1Chr16:25905311–25906957 (-)4.475e-11
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)3.398e-11