Overview Annotation GWAS Evidence Associated genes

P53801

Metabolite ID
P53801
Deionized mass
384.1885 Da
Average m/z
385.1962
Average RT
30.3250
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
4
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

4 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G235400 hypothetical protein AT3G55850:LAF3:Amidohydrolase family 2Chr15:44293034–44301824 (-)5.643e-11
Glyma.15G235600 hypothetical protein AT3G54440:AT3G54440:glycoside hydrolase family 2 protein 1Chr15:44320970–44329382 (-)5.643e-11
Glyma.15G235900 hypothetical protein AT2G40030:NRPD1B:nuclear RNA polymerase D1B 1Chr15:44346879–44363540 (-)5.643e-11
Glyma.15G236000 hypothetical protein NA 1Chr15:44416946–44420643 (+)5.643e-11