Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53777

Metabolite ID
P53777
Deionized mass
532.1106 Da
Average m/z
533.1151
Average RT
30.3177
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.69e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)1.022e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.998e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.325e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.806e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.622e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.326e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)7.141e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)7.141e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)7.141e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.433e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)2.142e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)3.858e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)3.019e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.69e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.69e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.69e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.69e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.427e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.062e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.062e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.062e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.062e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.732e-12
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)6.468e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.31e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.33e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.33e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.363e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.363e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.136e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.352e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.486e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)1.182e-12
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)1.182e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)7.664e-13
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.277e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.508e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.248e-18
Glyma.16G200400 hypothetical protein NA 1Chr16:36151273–36155406 (+)7.802e-11
Glyma.16G200500 hypothetical protein AT5G51840:AT5G51840:junctophilin-like protein 1Chr16:36163525–36167913 (-)7.802e-11
Glyma.16G200600 hypothetical protein AT5G51830:AT5G51830:pfkB-like carbohydrate kinase family protein 1Chr16:36173339–36177658 (-)7.802e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.704e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.704e-11