Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53768

Metabolite ID
P53768
Deionized mass
354.6515 Da
Average m/z
355.6587
Average RT
30.3148
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G018000 hypothetical protein NA 2Chr16:1601748–1607341 (-)1.2e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.88e-11
Glyma.18G201700 hypothetical protein NA 2Chr18:48175554–48180264 (+)6.637e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.612e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.663e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.46e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.425e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.586e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.332e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.332e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.955e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.517e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.517e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.517e-15
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.045e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.275e-11
Glyma.07G080900 hypothetical protein NA 1Chr07:7381339–7405785 (+)1.139e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.71e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.234e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.29e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.017e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.017e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.017e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.017e-13
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)1.417e-12
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)4.753e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.215e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.215e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)9.237e-11
Glyma.13G163400 hypothetical protein AT5G20350:TIP1:Ankyrin repeat family protein with DHHC zinc finger domain-containing protein 1Chr13:27861309–27869162 (+)9.655e-11
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)6.864e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.652e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.455e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.08e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.288e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)8.757e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.509e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.509e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)2.022e-11
Glyma.18G057500 hypothetical protein AT2G30170:PBCP:Protein phosphatase 2C family protein 1Chr18:5080060–5083756 (-)6.203e-12
Glyma.18G057600 hypothetical protein AT1G07020:AT1G07020:uncharacterized protein 1Chr18:5084210–5084791 (+)6.203e-12
Glyma.18G057900 hypothetical protein NA 1Chr18:5092695–5097651 (-)6.203e-12
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)3.992e-11
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)3.024e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)2.394e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)2.394e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.818e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.034e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.153e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)6.232e-11
Glyma.20G123100 hypothetical protein AT2G01110:APG2:Sec-independent periplasmic protein translocase 1Chr20:36592639–36595961 (+)5.481e-11