Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53755

Metabolite ID
P53755
Deionized mass
386.1815 Da
Average m/z
387.1882
Average RT
30.3085
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.469e-13
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)1.043e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.473e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.948e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.557e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)3.412e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.047e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.822e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.822e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.822e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.766e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.892e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.925e-15
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.798e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.469e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.469e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.327e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.373e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.676e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.949e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.774e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.773e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.774e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.774e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.673e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.38e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)8.73e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.662e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.523e-13
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.508e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.12e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)8.221e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.457e-16
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.2e-16
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.544e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.749e-22
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.589e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.372e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.473e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.906e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.906e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.948e-12
Glyma.18G184200 hypothetical protein NA 1Chr18:44364673–44366631 (-)5.739e-11
Glyma.18G213300 hypothetical protein AT5G43180:AT5G43180:transmembrane protein, putative (Protein of unknown function, DUF599) 1Chr18:50026808–50028261 (-)1.459e-12
Glyma.18G213400 hypothetical protein NA 1Chr18:50037003–50043647 (+)1.459e-12