Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53742

Metabolite ID
P53742
Deionized mass
468.0981 Da
Average m/z
469.1069
Average RT
30.3012
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.263e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.459e-14
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)5.459e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.96e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.96e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.374e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.362e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)2.514e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.388e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.029e-14
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)9.011e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)8.974e-12
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)8.974e-12
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)8.974e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)5.178e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.185e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.266e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.266e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.266e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.285e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.574e-12
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)2.272e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)6.386e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.459e-14
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)3.515e-13
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)3.515e-13
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)1.133e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.023e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.059e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.728e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.34e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)4.67e-12
Glyma.11G192600 hypothetical protein AT2G28200:AT2G28200:C2H2-type zinc finger family protein 1Chr11:26572944–26574724 (-)9.814e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)4.522e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.045e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.14e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)9.73e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.166e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.166e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.96e-11
Glyma.14G017600 hypothetical protein AT5G55280:FTSZ1-1:homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 1Chr14:1257629–1260935 (+)3.475e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.121e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)9.144e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.688e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.773e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)3.509e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)3.509e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)3.509e-11
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)2.208e-12
Glyma.16G039800 hypothetical protein NA 1Chr16:3730538–3733668 (-)2.75e-11
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)6.43e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)2.079e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.535e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)8.097e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)6.872e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.891e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)9.747e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.018e-11