Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53660

Metabolite ID
P53660
Deionized mass
650.2688 Da
Average m/z
651.2771
Average RT
30.2061
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)2.069e-13
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)9.636e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)3.551e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)7.69e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.923e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.923e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.093e-14
Glyma.03G172800 hypothetical protein NA 1Chr03:38686815–38687522 (-)1.091e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.721e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.392e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.392e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.4e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.315e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.315e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.315e-15
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)6.374e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.461e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.758e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.182e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.182e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.503e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.81e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.014e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.014e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.103e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.026e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.19e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.197e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.197e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.341e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.549e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.549e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.549e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.549e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)2.415e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.787e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.225e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.875e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.732e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.731e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.574e-13
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)1.245e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)6.128e-12
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)2.02e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.247e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)1.943e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.292e-13
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)5.191e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.352e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.496e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.359e-11